The Institute offers the following Postgraduate programmes at Mesra and its Extension Centres.

M. E. programme at Mesra in various specializations in the following disciplines:

M. Pharm programme at Mesra in the following four specializations:

1. Pharmaceutical Chemistry
2. Pharmaceutics
3. Pharmacology
4. Pharmacognosy

M. Tech programme at Mesra in the following disciplines:

1. Computer Science
2. Environmental Science & Engineering
3. Fuels and Combustion
4. New Materials & Processing Technology
5. Scientific Computing
6. Remote Sensing
7. Biotechnology

MBA - Master of Business Administration – programme at Mesra, Jaipur, Lalpur, Noida and Kolkata.

MCA - Master of Computer Applications – programme at Mesra, Allahabad, Jaipur, Kolkata, Lalpur, and Noida.

MUP - Master of Urban Planning (Town Planning) – programme at Mesra.

MTPM - Master in Transportation Planning and Management - Programme at Mesra

M.Sc. programme at Mesra in the following disciplines:

1. Applied Chemistry
2. Applied Mathematics
3. Applied Physics
4. Bio-Informatics
5. Bio-Medical Instrumentation
6. Geo-Informatics
7. Information Science

 M.Sc. programme  in Geo informatics at Jaipur

 M.Tech programme in Fusion Science and Plasma Technology at Jaipur

Master in Animation & Design - programme at Jaipur and Noida

M.Sc. programme at Kolkata in the following disciplines:

1. Bio-Informatics
2. Geo-Informatics

M.Sc. programme in Information Technology at Lalpur, for Girls only.

The Institute offers Ph. D. in all the above disciplines at Mesra and the Extension Centres.